PH01000000G0710's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G65960 : 5.70E-87
Blast annotation: GTP binding
2.Location
Scaffold: PH01000000
Strand: -
| Region | Start | End |
| gene | 390502 | 394942 |
| mRNA | 390502 | 394942 |
| exon | 390502 | 391022 |
| exon | 391314 | 391442 |
| exon | 393676 | 394003 |
| exon | 394110 | 394245 |
| exon | 394377 | 394437 |
| exon | 394834 | 394942 |
| CDS | 390511 | 391022 |
| CDS | 391314 | 391442 |
| CDS | 393676 | 394003 |
| CDS | 394110 | 394245 |
| CDS | 394377 | 394437 |
| CDS | 394834 | 394924 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001034 | STE_STE20-YSK (from iTAK) protein phosphatase type 2A complex, glycolipid_6-alpha-mannosyltransferase_activity GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001112 | protein phosphatase type 2A complex, GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity glycolipid_6-alpha-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) protein phosphatase type 2A regulator activity, mRNA_surveillance_pathway Proteasome protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00071.21 | Ras | 15 | 173 |
| PF10199.8 | Adaptin_binding | 212 | 402 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
| GO:0007264 | small GTPase mediated signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.