PH01000000G0970's details annotation
1.Annotation
ICBR annotation: expansin precursor, putative, expressed
Blast result AT3G03220 : 2.90E-95
Blast annotation: expansin A13
2.Location
Scaffold: PH01000000
Strand: -
| Region | Start | End |
| gene | 542819 | 545978 |
| mRNA | 542819 | 545978 |
| exon | 542819 | 543238 |
| exon | 544962 | 545466 |
| exon | 545747 | 545978 |
| CDS | 542929 | 543238 |
| CDS | 544962 | 545466 |
| CDS | 545747 | 545894 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001276 | GT8 GlycosylTransferases plant-type cell wall organization, extracellular region, |
| coexpression network | CFinderM001277 | plant-type cell wall organization, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis extracellular region, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03330.17 | DPBB_1 | 68 | 153 |
| PF01357.20 | Pollen_allerg_1 | 164 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005576 | extracellular region |
| GO:0009664 | plant-type cell wall organization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.