PH01000000G1660's details annotation
1.Annotation
ICBR annotation: GRAS family transcription factor domain containing protein, expressed
Blast result AT5G52510 : 6.10E-75
Blast annotation: SCARECROW-like 8
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 1028082 | 1030591 |
| mRNA | 1028082 | 1030591 |
| exon | 1028082 | 1030591 |
| CDS | 1028712 | 1030544 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001463 | alpha-Linolenic_acid_metabolism Fatty_acid_metabolism GRAS Transcription_Regulator(from PlantTFDB) fatty acid metabolic process, 3-hydroxyacyl-CoA_dehydrogenase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRAS |
| Transcription_Regulator(from PlantTFDB) | GRAS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03514.13 | GRAS | 243 | 609 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.