PH01000000G2000's details annotation
1.Annotation
ICBR annotation: uncharacterized mscS family protein, putative, expressed
Blast result AT4G00290 : 9.00E-31
Blast annotation: Mechanosensitive ion channel protein
2.Location
Scaffold: PH01000000
Strand: -
| Region | Start | End |
| gene | 1230162 | 1237851 |
| mRNA | 1230162 | 1237851 |
| exon | 1230162 | 1232498 |
| exon | 1233515 | 1233736 |
| exon | 1234657 | 1234764 |
| exon | 1234941 | 1235042 |
| exon | 1235634 | 1235734 |
| exon | 1236213 | 1236484 |
| exon | 1236938 | 1237851 |
| CDS | 1232394 | 1232498 |
| CDS | 1233515 | 1233736 |
| CDS | 1234657 | 1234764 |
| CDS | 1234941 | 1235042 |
| CDS | 1235634 | 1235734 |
| CDS | 1236213 | 1236484 |
| CDS | 1236938 | 1237722 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000586 | Riboflavin_metabolism aldehyde-lyase_activity 3-hydroxyisobutyrate dehydrogenase activity, valine metabolic process, Mo-molybdopterin cofactor biosynthetic process, ATP-dependent peptidase activity, phosphogluconate dehydrogenase (decarboxylating) activity, pentose-phosphate shunt, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00924.17 | MS_channel | 1 | 100 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.