PH01000000G2120's details annotation
1.Annotation
ICBR annotation: aminotransferase, classes I and II, domain containing protein, expressed
Blast result AT4G11280 : 2.00E-171
Blast annotation: 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 1334444 | 1337687 |
| mRNA | 1334444 | 1337687 |
| exon | 1334444 | 1334784 |
| exon | 1334886 | 1335017 |
| exon | 1335168 | 1335328 |
| exon | 1335845 | 1337687 |
| CDS | 1334626 | 1334784 |
| CDS | 1334886 | 1335017 |
| CDS | 1335168 | 1335328 |
| CDS | 1335845 | 1336850 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000037 | AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) Tify Transcription_Regulator(from iTAK) apoplast, Cysteine_and_methionine_metabolism Plant_hormone_signal_transduction regulation of transcription, DNA-dependent, |
| coexpression network | CFinderM000742 | protein neddylation, cellular protein modification process, Ubiquitin_mediated_proteolysis Cysteine_and_methionine_metabolism Tify Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00155.20 | Aminotran_1_2 | 45 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] | ko00270 | K01762 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0009058 | biosynthetic process |
| GO:0030170 | pyridoxal phosphate binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.