PH01000000G2190's details annotation
1.Annotation
ICBR annotation: deoxyribonuclease tatD, putative, expressed
Blast result AT5G17570 : 1.40E-85
Blast annotation: TatD related DNase
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 1369216 | 1373514 |
| mRNA | 1369216 | 1373514 |
| exon | 1369216 | 1370134 |
| exon | 1370212 | 1370285 |
| exon | 1370361 | 1370442 |
| exon | 1370805 | 1370855 |
| exon | 1371018 | 1371118 |
| exon | 1371420 | 1371442 |
| exon | 1371536 | 1371573 |
| exon | 1371650 | 1371838 |
| exon | 1373119 | 1373514 |
| CDS | 1369979 | 1370134 |
| CDS | 1370212 | 1370285 |
| CDS | 1370361 | 1370442 |
| CDS | 1370805 | 1370855 |
| CDS | 1371018 | 1371118 |
| CDS | 1371420 | 1371442 |
| CDS | 1371536 | 1371573 |
| CDS | 1371650 | 1371838 |
| CDS | 1373119 | 1373247 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01026.20 | TatD_DNase | 15 | 161 |
| PF01026.20 | TatD_DNase | 165 | 267 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016888 | endodeoxyribonuclease activity, producing 5'-phosphomonoesters |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.