Annotation of co-expression genes

PH01000000G2270's details annotation

1.Annotation

ICBR annotation: leucine-rich repeat family protein, putative, expressed

Blast result AT4G36180 : 0.00E+00
Blast annotation: Leucine-rich receptor-like protein kinase family protein

2.Location

Scaffold: PH01000000
Strand: -

RegionStartEnd
gene14210971438870
mRNA14210971438870
exon14210971421803
exon14227251422910
exon14233561423488
exon14274311427517
exon14288201432026
exon14339951434087
exon14351261435640
exon14356971438870
CDS14213211421803
CDS14227251422910
CDS14233561423488
CDS14274311427517
CDS14288201432026
CDS14339951434087
CDS14351261435640
CDS14356971438648

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23876
PF13855.5LRR_8229285
PF13855.5LRR_8326383
PF12799.6LRR_4468507
PF13855.5LRR_8612672
PF00560.32LRR_1685704
PF00069.24Pkinase8551087
PF13855.5LRR_813241380
PF13855.5LRR_814201478
PF12799.6LRR_415631602
PF13855.5LRR_816351695
PF13855.5LRR_817071767
PF00560.32LRR_117801799
PF00069.24Pkinase19502174

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.