PH01000000G3890's details annotation
1.Annotation
ICBR annotation: WD-40 repeat family protein, putative, expressed
Blast result AT5G53500 : 2.00E-136
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000000
Strand: -
| Region | Start | End |
| gene | 2496304 | 2500729 |
| mRNA | 2496304 | 2500729 |
| exon | 2496304 | 2498533 |
| exon | 2498622 | 2498715 |
| exon | 2498824 | 2498903 |
| exon | 2499027 | 2499078 |
| exon | 2499173 | 2499330 |
| exon | 2499424 | 2499514 |
| exon | 2499624 | 2500729 |
| CDS | 2497941 | 2498533 |
| CDS | 2498622 | 2498715 |
| CDS | 2498824 | 2498903 |
| CDS | 2499027 | 2499078 |
| CDS | 2499173 | 2499330 |
| CDS | 2499424 | 2499514 |
| CDS | 2499624 | 2500622 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 215 | 247 |
| PF00400.31 | WD40 | 312 | 347 |
| PF00400.31 | WD40 | 353 | 390 |
| PF00400.31 | WD40 | 501 | 524 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.