PH01000000G5370's details annotation
1.Annotation
ICBR annotation: transmembrane protein, putative, expressed
Blast result AT4G38360 : 5.60E-52
Blast annotation: Protein of unknown function (DUF300)
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 3518317 | 3522350 |
| mRNA | 3518317 | 3522350 |
| exon | 3518317 | 3518732 |
| exon | 3518845 | 3518901 |
| exon | 3518983 | 3519091 |
| exon | 3520508 | 3520734 |
| exon | 3520893 | 3520963 |
| exon | 3521532 | 3521823 |
| exon | 3521981 | 3522350 |
| CDS | 3518613 | 3518732 |
| CDS | 3518845 | 3518901 |
| CDS | 3518983 | 3519091 |
| CDS | 3520508 | 3520734 |
| CDS | 3520893 | 3520963 |
| CDS | 3521532 | 3521823 |
| CDS | 3521981 | 3522298 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000819 | katanin_complex microtubule_severing cellulose biosynthetic process, microtubule binding, cellulose synthase (UDP-forming) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03619.15 | Solute_trans_a | 11 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.