PH01000000G7190's details annotation
1.Annotation
ICBR annotation: beige/BEACH domain containing protein, expressed
Blast result AT2G45540 : 0.00E+00
Blast annotation: WD-40 repeat family protein / beige-related
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 4652470 | 4665564 |
| mRNA | 4652470 | 4665564 |
| exon | 4652470 | 4655531 |
| exon | 4655903 | 4656202 |
| exon | 4657111 | 4657898 |
| exon | 4658360 | 4659076 |
| exon | 4659548 | 4659682 |
| exon | 4659878 | 4659982 |
| exon | 4660113 | 4660226 |
| exon | 4660378 | 4660454 |
| exon | 4660628 | 4660709 |
| exon | 4661285 | 4661623 |
| exon | 4662073 | 4662129 |
| exon | 4662920 | 4662976 |
| exon | 4663317 | 4663939 |
| exon | 4664344 | 4664428 |
| exon | 4664584 | 4665564 |
| CDS | 4654949 | 4655531 |
| CDS | 4655903 | 4656202 |
| CDS | 4657111 | 4657898 |
| CDS | 4658360 | 4659076 |
| CDS | 4659548 | 4659682 |
| CDS | 4659878 | 4659982 |
| CDS | 4660113 | 4660226 |
| CDS | 4660378 | 4660454 |
| CDS | 4660628 | 4660709 |
| CDS | 4661285 | 4661623 |
| CDS | 4662073 | 4662129 |
| CDS | 4662920 | 4662976 |
| CDS | 4663317 | 4663939 |
| CDS | 4664344 | 4664428 |
| CDS | 4664584 | 4664700 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15787.4 | DUF4704 | 301 | 581 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.