PH01000000G7210's details annotation
1.Annotation
ICBR annotation: WD domain containing protein, putative, expressed
Blast result AT2G45540 : 3.40E-69
Blast annotation: WD-40 repeat family protein / beige-related
2.Location
Scaffold: PH01000000
Strand: +
| Region | Start | End |
| gene | 4680922 | 4685362 |
| mRNA | 4680922 | 4685362 |
| exon | 4680922 | 4681598 |
| exon | 4682081 | 4682447 |
| exon | 4682970 | 4683295 |
| exon | 4683830 | 4683952 |
| exon | 4684114 | 4685362 |
| CDS | 4681389 | 4681598 |
| CDS | 4682081 | 4682447 |
| CDS | 4682970 | 4683295 |
| CDS | 4683830 | 4683952 |
| CDS | 4684114 | 4684182 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001115 | vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Oxidative_phosphorylation Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 213 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.