PH01000001G0140's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G22290 : 2.80E-29
Blast annotation: Ubiquitin-specific protease family C19-related protein
2.Location
Scaffold: PH01000001
Strand: -
| Region | Start | End |
| gene | 89853 | 94030 |
| mRNA | 89853 | 94030 |
| exon | 89853 | 91236 |
| exon | 91926 | 92081 |
| exon | 92800 | 93357 |
| exon | 93858 | 94030 |
| CDS | 91021 | 91236 |
| CDS | 91926 | 92081 |
| CDS | 92800 | 93357 |
| CDS | 93858 | 93860 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000619 | TKL-Pl-4 (from iTAK) Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.