PH01000001G2030's details annotation
1.Annotation
ICBR annotation: remorin, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000001
Strand: +
| Region | Start | End |
| gene | 1345860 | 1349755 |
| mRNA | 1345860 | 1349755 |
| exon | 1345860 | 1346414 |
| exon | 1348651 | 1348713 |
| exon | 1348803 | 1348890 |
| exon | 1349288 | 1349369 |
| exon | 1349529 | 1349755 |
| CDS | 1346213 | 1346414 |
| CDS | 1348651 | 1348713 |
| CDS | 1348803 | 1348890 |
| CDS | 1349288 | 1349369 |
| CDS | 1349529 | 1349729 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000397 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding Spliceosome phospholipid binding, |
| coexpression network | CFinderM000451 | protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis small protein activating enzyme activity, cellular protein modification process, |
| coexpression network | CFinderM000452 | protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, calcium-dependent phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03766.12 | Remorin_N | 31 | 95 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.