PH01000001G2510's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT3G28340 : 1.10E-66
Blast annotation: galacturonosyltransferase-like 10
2.Location
Scaffold: PH01000001
Strand: -
| Region | Start | End |
| gene | 1657286 | 1660528 |
| mRNA | 1657286 | 1660528 |
| exon | 1657286 | 1658803 |
| exon | 1659463 | 1659490 |
| exon | 1659894 | 1660528 |
| CDS | 1657736 | 1658803 |
| CDS | 1659463 | 1659490 |
| CDS | 1659894 | 1660120 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001276 | GT8 GlycosylTransferases plant-type cell wall organization, extracellular region, |
| coexpression network | CFinderM001639 | intracellular_distribution_of_mitochondria plant-type cell wall organization, GT8 GlycosylTransferases extracellular region, SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT8 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01501.19 | Glyco_transf_8 | 263 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.