Annotation of co-expression genes

PH01000002G0490's details annotation

1.Annotation

ICBR annotation: sucrose-phosphate synthase, putative, expressed

Blast result AT1G04920 : 0.00E+00
Blast annotation: sucrose phosphate synthase 3F

2.Location

Scaffold: PH01000002
Strand: -

RegionStartEnd
gene362898370618
mRNA362898370618
exon362898364095
exon364160364270
exon364564364848
exon364932365059
exon365162365509
exon365814366362
exon366455366517
exon366610366703
exon366856366953
exon367162367293
exon367400367534
exon367672368364
exon368454368517
exon368774369006
exon369489370618
CDS363717364095
CDS364160364270
CDS364564364848
CDS364932365059
CDS365162365509
CDS365814366362
CDS366455366517
CDS366610366703
CDS366856366953
CDS367162367293
CDS367400367534
CDS367672368364
CDS368454368517
CDS368774369006
CDS369489369878

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
GlycosylTransferasesGT4

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00862.18Sucrose_synth204467
PF00534.19Glycos_transf_1511671
PF05116.12S6PP8211018

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Starch and sucrose metabolismsucrose-phosphate synthase [EC:2.4.1.14]ko00500K00696

10.Gene Ontology

GO AccessionGO Annotation
GO:0005985sucrose metabolic process
GO:0009058biosynthetic process
GO:0046524sucrose-phosphate synthase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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