PH01000002G2500's details annotation
1.Annotation
ICBR annotation: ribosomal protein L7Ae, putative, expressed
Blast result AT4G02440 : 6.10E-08
Blast annotation: F-box family protein
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 1782203 | 1786240 |
| mRNA | 1782203 | 1786240 |
| exon | 1782203 | 1784051 |
| exon | 1784146 | 1784238 |
| exon | 1784352 | 1784480 |
| exon | 1784595 | 1784764 |
| exon | 1785540 | 1786240 |
| CDS | 1783920 | 1784051 |
| CDS | 1784146 | 1784238 |
| CDS | 1784352 | 1784480 |
| CDS | 1784595 | 1784764 |
| CDS | 1785540 | 1785762 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01248.25 | Ribosomal_L7Ae | 104 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030529 | ribonucleoprotein complex |
| GO:0042254 | ribosome biogenesis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.