PH01000002G3900's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G15830 : 2.70E-70
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000002
Strand: -
| Region | Start | End |
| gene | 2652572 | 2654335 |
| mRNA | 2652572 | 2654335 |
| exon | 2652572 | 2653312 |
| exon | 2653400 | 2653594 |
| exon | 2653691 | 2653835 |
| exon | 2653934 | 2654335 |
| CDS | 2653055 | 2653312 |
| CDS | 2653400 | 2653594 |
| CDS | 2653691 | 2653835 |
| CDS | 2653934 | 2654268 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12348.7 | CLASP_N | 112 | 273 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.