Annotation of co-expression genes

PH01000002G4150's details annotation

1.Annotation

ICBR annotation: flowering promoting factor-like 1, putative, expressed

Blast result AT5G24860 : 3.40E-34
Blast annotation: flowering promoting factor 1

2.Location

Scaffold: PH01000002
Strand: -

RegionStartEnd
gene27783632779981
mRNA27783632779981
exon27783632779981
CDS27794902779825

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
nullnullnullnull

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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