PH01000003G1680's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G64680 : 7.30E-82
Blast annotation: -
2.Location
Scaffold: PH01000003
Strand: -
| Region | Start | End |
| gene | 1159889 | 1162932 |
| mRNA | 1159889 | 1162932 |
| exon | 1159889 | 1161011 |
| exon | 1161587 | 1161693 |
| exon | 1161817 | 1161878 |
| exon | 1161988 | 1162932 |
| CDS | 1160962 | 1161011 |
| CDS | 1161587 | 1161693 |
| CDS | 1161817 | 1161878 |
| CDS | 1161988 | 1162482 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000277 | Valine,_leucine_and_isoleucine_biosynthesis Alanine,_aspartate_and_glutamate_metabolism SNARE_interactions_in_vesicular_transport fructose-bisphosphate aldolase activity, glycolysis, |
| coexpression network | CFinderM000468 | cofactor binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13225.5 | DUF4033 | 159 | 222 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.