PH01000003G3650's details annotation
1.Annotation
ICBR annotation: OsIAA17 - Auxin-responsive Aux/IAA gene family member, expressed
Blast result AT4G29080 : 2.40E-31
Blast annotation: phytochrome-associated protein 2
2.Location
Scaffold: PH01000003
Strand: +
| Region | Start | End |
| gene | 2423769 | 2429369 |
| mRNA | 2423769 | 2429369 |
| exon | 2423769 | 2426074 |
| exon | 2426799 | 2427031 |
| exon | 2427826 | 2427925 |
| exon | 2428186 | 2428247 |
| exon | 2429195 | 2429369 |
| CDS | 2425758 | 2426074 |
| CDS | 2426799 | 2427031 |
| CDS | 2427826 | 2427925 |
| CDS | 2428186 | 2428247 |
| CDS | 2429195 | 2429232 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AUX/IAA |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02309.15 | AUX_IAA | 32 | 187 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.