PH01000004G0290's details annotation
1.Annotation
ICBR annotation: HEAT, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 168608 | 173706 |
| mRNA | 168608 | 173706 |
| exon | 168608 | 168831 |
| exon | 168935 | 169012 |
| exon | 169117 | 169503 |
| exon | 169618 | 169685 |
| exon | 169768 | 169819 |
| exon | 170834 | 170920 |
| exon | 171015 | 171043 |
| exon | 172075 | 172155 |
| exon | 172230 | 172300 |
| exon | 172691 | 172785 |
| exon | 173310 | 173706 |
| CDS | 168757 | 168831 |
| CDS | 168935 | 169012 |
| CDS | 169117 | 169503 |
| CDS | 169618 | 169685 |
| CDS | 169768 | 169819 |
| CDS | 170834 | 170920 |
| CDS | 171015 | 171043 |
| CDS | 172075 | 172155 |
| CDS | 172230 | 172300 |
| CDS | 172691 | 172785 |
| CDS | 173310 | 173345 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000682 | DNA_replication Ino80_complex DNA_replication,_Okazaki_fragment_processing nucleoside binding, single-stranded_DNA-dependent_ATPase_activity 5'-flap_endonuclease_activity ATP-dependent_5'-3'_DNA_helicase_activity DNA helicase activity, nucleobase-containing compound metabolic process, DNA-directed DNA polymerase activity, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.