PH01000004G1260's details annotation
1.Annotation
ICBR annotation: uricase, putative, expressed
Blast result AT2G26230 : 1.00E-114
Blast annotation: uricase / urate oxidase / nodulin 35, putative
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 836267 | 842243 |
| mRNA | 836267 | 842243 |
| exon | 836267 | 837358 |
| exon | 837447 | 837539 |
| exon | 837631 | 837706 |
| exon | 837759 | 837836 |
| exon | 839596 | 839705 |
| exon | 840562 | 840653 |
| exon | 841019 | 841192 |
| exon | 841296 | 841389 |
| exon | 842101 | 842243 |
| CDS | 837158 | 837358 |
| CDS | 837447 | 837539 |
| CDS | 837631 | 837706 |
| CDS | 837759 | 837836 |
| CDS | 839596 | 839705 |
| CDS | 840562 | 840653 |
| CDS | 841019 | 841192 |
| CDS | 841296 | 841389 |
| CDS | 842101 | 842184 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01014.17 | Uricase | 10 | 125 |
| PF01014.17 | Uricase | 173 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Caffeine metabolism | urate oxidase [EC:1.7.3.3] | ko00232 | K00365 |
| Purine metabolism | urate oxidase [EC:1.7.3.3] | ko00230 | K00365 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.