PH01000004G2220's details annotation
1.Annotation
ICBR annotation: transcription factor, putative, expressed
Blast result AT1G08320 : 3.60E-71
Blast annotation: bZIP transcription factor family protein
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 1437887 | 1446264 |
| mRNA | 1437887 | 1446264 |
| exon | 1437887 | 1440029 |
| exon | 1440421 | 1440503 |
| exon | 1440769 | 1441020 |
| exon | 1441912 | 1441959 |
| exon | 1442397 | 1442442 |
| exon | 1442565 | 1442836 |
| exon | 1442978 | 1443217 |
| exon | 1444770 | 1444912 |
| exon | 1445697 | 1446264 |
| CDS | 1439876 | 1440029 |
| CDS | 1440421 | 1440503 |
| CDS | 1440769 | 1441020 |
| CDS | 1441912 | 1441959 |
| CDS | 1442397 | 1442442 |
| CDS | 1442565 | 1442836 |
| CDS | 1442978 | 1443217 |
| CDS | 1444770 | 1444912 |
| CDS | 1445697 | 1445790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14144.5 | DOG1 | 214 | 288 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.