PH01000004G2710's details annotation
1.Annotation
ICBR annotation: AT hook motif family protein, expressed
Blast result AT1G19485 : 2.20E-81
Blast annotation: Transducin/WD40 repeat-like superfamily protein
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 1764609 | 1774355 |
| mRNA | 1764609 | 1774355 |
| exon | 1764609 | 1765011 |
| exon | 1766560 | 1766686 |
| exon | 1768096 | 1769922 |
| exon | 1770244 | 1770302 |
| exon | 1770506 | 1770575 |
| exon | 1770708 | 1770747 |
| exon | 1771007 | 1771079 |
| exon | 1771166 | 1771228 |
| exon | 1771622 | 1771699 |
| exon | 1772685 | 1772857 |
| exon | 1773276 | 1773322 |
| exon | 1773415 | 1774355 |
| CDS | 1764803 | 1765011 |
| CDS | 1766560 | 1766686 |
| CDS | 1768096 | 1769922 |
| CDS | 1770244 | 1770302 |
| CDS | 1770506 | 1770575 |
| CDS | 1770708 | 1770747 |
| CDS | 1771007 | 1771079 |
| CDS | 1771166 | 1771228 |
| CDS | 1771622 | 1771699 |
| CDS | 1772685 | 1772857 |
| CDS | 1773276 | 1773322 |
| CDS | 1773415 | 1773987 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.