PH01000004G3220's details annotation
1.Annotation
ICBR annotation: nsp1-like C-terminal region family protein, expressed
Blast result AT2G45000 : 4.80E-37
Blast annotation: structural constituent of nuclear pore
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 2025839 | 2029791 |
| mRNA | 2025839 | 2029791 |
| exon | 2025839 | 2026178 |
| exon | 2026750 | 2026832 |
| exon | 2028291 | 2028350 |
| exon | 2028828 | 2028931 |
| exon | 2029117 | 2029204 |
| exon | 2029272 | 2029370 |
| exon | 2029434 | 2029791 |
| CDS | 2026124 | 2026178 |
| CDS | 2026750 | 2026832 |
| CDS | 2028291 | 2028350 |
| CDS | 2028828 | 2028931 |
| CDS | 2029117 | 2029204 |
| CDS | 2029272 | 2029370 |
| CDS | 2029434 | 2029598 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001718 | phosphoribosyl-AMP cyclohydrolase activity, histidine biosynthetic process, RNA modification, pseudouridine synthesis, nuclear pore, |
| coexpression network | CFinderM001719 | nuclear pore, RNA modification, pseudouridine synthesis, pseudouridine synthase activity, Ribosome_biogenesis_in_eukaryotes RNA_transport |
| coexpression network | CFinderM001720 | RNA_polymerase_II_transcription_cofactor_activity NAD+ ADP-ribosyltransferase activity, mediator complex, nuclear pore, regulation of transcription from RNA polymerase II promoter, protein transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | nuclear pore complex protein Nup62 | ko03013 | K14306 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005643 | nuclear pore |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.