PH01000004G3230's details annotation
1.Annotation
ICBR annotation: transmembrane amino acid transporter protein, putative, expressed
Blast result AT5G01240 : 0.00E+00
Blast annotation: like AUXIN RESISTANT 1
2.Location
Scaffold: PH01000004
Strand: -
| Region | Start | End |
| gene | 2031818 | 2038930 |
| mRNA | 2031818 | 2038930 |
| exon | 2031818 | 2032557 |
| exon | 2033824 | 2034289 |
| exon | 2035910 | 2036007 |
| exon | 2036222 | 2036405 |
| exon | 2036565 | 2036677 |
| exon | 2037148 | 2037333 |
| exon | 2037472 | 2038930 |
| CDS | 2032372 | 2032557 |
| CDS | 2033824 | 2034289 |
| CDS | 2035910 | 2036007 |
| CDS | 2036222 | 2036405 |
| CDS | 2036565 | 2036677 |
| CDS | 2037148 | 2037333 |
| CDS | 2037472 | 2037672 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001237 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01490.17 | Aa_trans | 52 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | auxin influx carrier (AUX1 LAX family) | ko04075 | K13946 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.