PH01000004G3640's details annotation
1.Annotation
ICBR annotation: glycerol-3-phosphate acyltransferase, putative, expressed
Blast result AT2G38110 : 5.00E-117
Blast annotation: glycerol-3-phosphate acyltransferase 6
2.Location
Scaffold: PH01000004
Strand: +
| Region | Start | End |
| gene | 2339443 | 2343474 |
| mRNA | 2339443 | 2343474 |
| exon | 2339443 | 2340162 |
| exon | 2341767 | 2342093 |
| exon | 2343164 | 2343474 |
| CDS | 2339548 | 2340162 |
| CDS | 2341767 | 2342093 |
| CDS | 2343164 | 2343331 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000689 | hydrolase activity, acting on ester bonds, lipid metabolic process, hydrolase activity, RLK-Pelle_Extensin (from iTAK) lipase activity, lipid transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12710.6 | HAD | 23 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerolipid metabolism | glycerol-3-phosphate acyltransferase [EC:2.3.1.15] | ko00561 | K13508 |
| Glycerophospholipid metabolism | glycerol-3-phosphate acyltransferase [EC:2.3.1.15] | ko00564 | K13508 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.