PH01000005G1420's details annotation
1.Annotation
ICBR annotation: methyltransferase, putative, expressed
Blast result AT4G34360 : 4.50E-89
Blast annotation: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 882394 | 888423 |
| mRNA | 882394 | 888423 |
| exon | 882394 | 883105 |
| exon | 883267 | 883371 |
| exon | 883713 | 883847 |
| exon | 884850 | 884932 |
| exon | 885031 | 885172 |
| exon | 885335 | 885431 |
| exon | 885524 | 888423 |
| CDS | 882980 | 883105 |
| CDS | 883267 | 883371 |
| CDS | 883713 | 883847 |
| CDS | 884850 | 884932 |
| CDS | 885031 | 885172 |
| CDS | 885335 | 885431 |
| CDS | 885524 | 885579 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13847.5 | Methyltransf_31 | 49 | 169 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.