PH01000005G1790's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G43680 : 3.50E-14
Blast annotation: -
2.Location
Scaffold: PH01000005
Strand: +
| Region | Start | End |
| gene | 1132938 | 1137037 |
| mRNA | 1132938 | 1137037 |
| exon | 1132938 | 1134585 |
| exon | 1135082 | 1135202 |
| exon | 1135323 | 1135378 |
| exon | 1135451 | 1135637 |
| exon | 1136413 | 1137037 |
| CDS | 1134553 | 1134585 |
| CDS | 1135082 | 1135202 |
| CDS | 1135323 | 1135378 |
| CDS | 1135451 | 1135637 |
| CDS | 1136413 | 1136522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000013 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, response to oxidative stress, extracellular polysaccharide biosynthetic process, hydrolase activity, hydrolyzing O-glycosyl compounds, carbohydrate metabolic process, |
| coexpression network | CFinderM000782 | cellulose biosynthetic process, cellulose synthase (UDP-forming) activity, chaperone binding, AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) integral to membrane, membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.