PH01000005G1830's details annotation
1.Annotation
ICBR annotation: palmitoyltransferase TIP1, putative, expressed
Blast result AT2G14255 : 6.00E-125
Blast annotation: Ankyrin repeat family protein with DHHC zinc finger domain
2.Location
Scaffold: PH01000005
Strand: -
| Region | Start | End |
| gene | 1148526 | 1156009 |
| mRNA | 1148526 | 1156009 |
| exon | 1148526 | 1148950 |
| exon | 1149715 | 1149863 |
| exon | 1149935 | 1150013 |
| exon | 1150610 | 1150708 |
| exon | 1150942 | 1151019 |
| exon | 1151368 | 1151416 |
| exon | 1151779 | 1151806 |
| exon | 1152317 | 1152454 |
| exon | 1152620 | 1152650 |
| exon | 1153205 | 1153265 |
| exon | 1154204 | 1154316 |
| exon | 1155070 | 1155210 |
| exon | 1155291 | 1156009 |
| CDS | 1148756 | 1148950 |
| CDS | 1149715 | 1149863 |
| CDS | 1149935 | 1150013 |
| CDS | 1150610 | 1150708 |
| CDS | 1150942 | 1151019 |
| CDS | 1151368 | 1151416 |
| CDS | 1151779 | 1151806 |
| CDS | 1152317 | 1152454 |
| CDS | 1152620 | 1152650 |
| CDS | 1153205 | 1153265 |
| CDS | 1154204 | 1154316 |
| CDS | 1155070 | 1155210 |
| CDS | 1155291 | 1155584 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001722 | GTP_catabolic_process small GTPase mediated signal transduction, protein transport, signal transduction, GTPase activity, GTP binding, large ribosomal subunit, intracellular, membrane, nucleocytoplasmic transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12796.6 | Ank_2 | 47 | 139 |
| PF12796.6 | Ank_2 | 140 | 199 |
| PF00023.29 | Ank | 213 | 246 |
| PF01529.19 | DHHC | 305 | 433 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.