PH01000005G2010's details annotation
1.Annotation
ICBR annotation: phospholipase, patatin family, putative, expressed
Blast result AT1G33270 : 7.40E-87
Blast annotation: Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
2.Location
Scaffold: PH01000005
Strand: +
| Region | Start | End |
| gene | 1265994 | 1270245 |
| mRNA | 1265994 | 1270245 |
| exon | 1265994 | 1266740 |
| exon | 1267264 | 1267358 |
| exon | 1268372 | 1268444 |
| exon | 1268527 | 1268632 |
| exon | 1268731 | 1268827 |
| exon | 1269622 | 1269717 |
| exon | 1269802 | 1270245 |
| CDS | 1266362 | 1266740 |
| CDS | 1267264 | 1267358 |
| CDS | 1268372 | 1268444 |
| CDS | 1268527 | 1268632 |
| CDS | 1268731 | 1268827 |
| CDS | 1269622 | 1269717 |
| CDS | 1269802 | 1269945 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000543 | GT1 GlycosylTransferases zinc ion transmembrane transporter activity, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport |
| coexpression network | CFinderM000719 | NAK (from iTAK) Glycerophospholipid_metabolism |
| coexpression network | CFinderM001211 | zinc ion transmembrane transporter activity, binding, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport cysteine-type peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.