Annotation of co-expression genes

PH01000006G0400's details annotation

1.Annotation

ICBR annotation: cyclin, putative, expressed

Blast result AT1G80370 : 3.20E-81
Blast annotation: Cyclin A2;4

2.Location

Scaffold: PH01000006
Strand: -

RegionStartEnd
gene269170273403
mRNA269170273403
exon269170270008
exon270210270344
exon270669270702
exon270804270880
exon270974271049
exon271294271427
exon271962272084
exon272255272361
exon272670273003
exon273084273403
CDS269910270008
CDS270210270344
CDS270669270702
CDS270804270880
CDS270974271049
CDS271294271427
CDS271962272084
CDS272255272361
CDS272670273003
CDS273084273389

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00134.22Cyclin_N259376
PF02984.18Cyclin_C398451

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000079regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005634nucleus
GO:0019901protein kinase binding
GO:0051726regulation of cell cycle

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.