PH01000006G2010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G24460 : 4.40E-90
Blast annotation: CRT (chloroquine-resistance transporter)-like transporter 2
2.Location
Scaffold: PH01000006
Strand: +
| Region | Start | End |
| gene | 1313380 | 1320517 |
| mRNA | 1313380 | 1320517 |
| exon | 1313380 | 1314461 |
| exon | 1314583 | 1314728 |
| exon | 1314893 | 1314930 |
| exon | 1315218 | 1315333 |
| exon | 1318227 | 1318326 |
| exon | 1318408 | 1318443 |
| exon | 1318615 | 1318665 |
| exon | 1318769 | 1318853 |
| exon | 1319479 | 1320517 |
| CDS | 1314325 | 1314461 |
| CDS | 1314583 | 1314728 |
| CDS | 1314893 | 1314930 |
| CDS | 1315218 | 1315333 |
| CDS | 1318227 | 1318326 |
| CDS | 1318408 | 1318443 |
| CDS | 1318615 | 1318665 |
| CDS | 1318769 | 1318853 |
| CDS | 1319479 | 1319633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000530 | RLK-Pelle_LRR-XIV (from iTAK) transmembrane transport, GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000531 | transmembrane transport, Plant_hormone_signal_transduction |
| coexpression network | CFinderM001128 | Galactose_metabolism Porphyrin_and_chlorophyll_metabolism |
| coexpression network | CFinderM001380 | Valine,_leucine_and_isoleucine_degradation RLK-Pelle_LRR-XIV (from iTAK) Benzoate_degradation GRAS Transcription_Regulator(from PlantTFDB) Fatty_acid_metabolism Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08627.9 | CRT-like | 12 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.