Annotation of co-expression genes

PH01000006G3360's details annotation

1.Annotation

ICBR annotation: glutathione synthetase, chloroplast precursor, putative, expressed

Blast result AT5G27380 : 1.00E-161
Blast annotation: glutathione synthetase 2

2.Location

Scaffold: PH01000006
Strand: +

RegionStartEnd
gene23387002345552
mRNA23387002345552
exon23387002339506
exon23404522340621
exon23409272341002
exon23411412341271
exon23419882342110
exon23435072343576
exon23438602343981
exon23442022344341
exon23444102344602
exon23447022345552
CDS23393962339506
CDS23404522340621
CDS23409272341002
CDS23411412341271
CDS23419882342110
CDS23435072343576
CDS23438602343981
CDS23442022344341
CDS23444102344602
CDS23447022344843

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03917.16GSH_synth_ATP13418
PF03199.14GSH_synthase83251

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glutathione metabolismglutathione synthase [EC:6.3.2.3]ko00480K01920

10.Gene Ontology

GO AccessionGO Annotation
GO:0004363glutathione synthase activity
GO:0005524ATP binding
GO:0006750glutathione biosynthetic process
GO:0016874ligase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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