Annotation of co-expression genes

PH01000007G0890's details annotation

1.Annotation

ICBR annotation: Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed

Blast result AT4G08170 : 5.90E-45
Blast annotation: Inositol 1,3,4-trisphosphate 5/6-kinase family protein

2.Location

Scaffold: PH01000007
Strand: +

RegionStartEnd
gene533892537652
mRNA533892537652
exon533892534653
exon536280536361
exon536551536583
exon536913537033
exon537519537652
CDS534511534653
CDS536280536361
CDS536551536583
CDS536913537033
CDS537519537619

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05770.10Ins134_P3_kin21157

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0005524ATP binding
GO:0005622intracellular
GO:0032957inositol trisphosphate metabolic process
GO:0047325inositol tetrakisphosphate 1-kinase activity
GO:0052725inositol-1,3,4-trisphosphate 6-kinase activity
GO:0052726inositol-1,3,4-trisphosphate 5-kinase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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