PH01000007G1520's details annotation
1.Annotation
ICBR annotation: AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed
Blast result AT4G37750 : 4.00E-106
Blast annotation: Integrase-type DNA-binding superfamily protein
2.Location
Scaffold: PH01000007
Strand: -
| Region | Start | End |
| gene | 980989 | 989530 |
| mRNA | 980989 | 989530 |
| exon | 980989 | 983686 |
| exon | 984270 | 984346 |
| exon | 984464 | 984514 |
| exon | 984596 | 984669 |
| exon | 984755 | 984843 |
| exon | 985079 | 985161 |
| exon | 986698 | 987211 |
| exon | 987294 | 989530 |
| CDS | 983070 | 983686 |
| CDS | 984270 | 984346 |
| CDS | 984464 | 984514 |
| CDS | 984596 | 984669 |
| CDS | 984755 | 984843 |
| CDS | 985079 | 985161 |
| CDS | 986698 | 987211 |
| CDS | 987294 | 987597 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | AP2/ERF-AP2 |
| Transcription_Regulator(from PlantTFDB) | AP2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00847.19 | AP2 | 266 | 322 |
| PF00847.19 | AP2 | 366 | 416 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.