PH01000008G0420's details annotation
1.Annotation
ICBR annotation: CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
Blast result AT4G28860 : 5.50E-40
Blast annotation: casein kinase I-like 4
2.Location
Scaffold: PH01000008
Strand: +
| Region | Start | End |
| gene | 284745 | 294925 |
| mRNA | 284745 | 294925 |
| exon | 284745 | 287555 |
| exon | 287666 | 287828 |
| exon | 288991 | 289062 |
| exon | 289151 | 289277 |
| exon | 289368 | 289409 |
| exon | 290011 | 290135 |
| exon | 290631 | 290659 |
| exon | 292012 | 292090 |
| exon | 292701 | 292819 |
| exon | 293082 | 293172 |
| exon | 293482 | 293554 |
| exon | 293756 | 294925 |
| CDS | 287518 | 287555 |
| CDS | 287666 | 287828 |
| CDS | 288991 | 289062 |
| CDS | 289151 | 289277 |
| CDS | 289368 | 289409 |
| CDS | 290011 | 290135 |
| CDS | 290631 | 290659 |
| CDS | 292012 | 292090 |
| CDS | 292701 | 292819 |
| CDS | 293082 | 293172 |
| CDS | 293482 | 293554 |
| CDS | 293756 | 293856 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02359.17 | CDC48_N | 32 | 72 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.