PH01000008G1560's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT3G01140 : 4.60E-82
Blast annotation: myb domain protein 106
2.Location
Scaffold: PH01000008
Strand: +
| Region | Start | End |
| gene | 1020693 | 1023426 |
| mRNA | 1020693 | 1023426 |
| exon | 1020693 | 1021627 |
| exon | 1021716 | 1021860 |
| exon | 1022434 | 1023426 |
| CDS | 1021495 | 1021627 |
| CDS | 1021716 | 1021860 |
| CDS | 1022434 | 1023244 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000751 | Cutin,_suberine_and_wax_biosynthesis Peroxisome fatty-acyl-CoA_reductase_(alcohol-forming)_activity MYB Transcription_Regulator(from PlantTFDB) lipid biosynthetic process, metabolic process, fatty acid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB |
| Transcription_Regulator(from PlantTFDB) | MYB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 14 | 61 |
| PF00249.30 | Myb_DNA-binding | 67 | 117 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.