PH01000009G0060's details annotation 1.Annotation ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT5G06100 : 2.10E-72 Blast annotation: myb domain protein 33 2.Location Scaffold: PH01000009 Strand: - Region | Start | End | gene | 53567 | 58000 | mRNA | 53567 | 58000 | exon | 53567 | 54030 | exon | 54104 | 55124 | exon | 56368 | 58000 | CDS | 53756 | 54030 | CDS | 54104 | 55124 | CDS | 56368 | 56736 |
UCSC genome browser 3.Network  4.Functional module Method | Module ID | Function Annotation | coexpression network | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, Linoleic_acid_metabolism iron ion binding, metal ion binding, oxidation-reduction process, MYB Transcription_Regulator(from PlantTFDB)
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism
| coexpression network | CFinderM001043 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Linoleic_acid_metabolism iron ion binding, metal ion binding, MYB Transcription_Regulator(from PlantTFDB)
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5.Cis-elements Details in 3kb promoter region 6.Expression profilings
7.Gene family Category | Family | Transcription_Regulator(from iTAK) | MYB | Transcription_Regulator(from PlantTFDB) | MYB |
8.Protein domain Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start | PF00249.30 | Myb_DNA-binding | 42 | 89 | PF00249.30 | Myb_DNA-binding | 95 | 138 |
9.KEGG Pathway Pathway | KEGG Ortholog | Pathway ID | KO | null | null | null | null |
10.Gene Ontology GO Accession | GO Annotation | GO:0003677 | DNA binding | GO:0003682 | chromatin binding |
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