PH01000009G2130's details annotation
1.Annotation
ICBR annotation: non-green plastid inner envelope membrane protein, putative, expressed
Blast result AT2G38550 : 1.60E-37
Blast annotation: Transmembrane proteins 14C
2.Location
Scaffold: PH01000009
Strand: -
| Region | Start | End |
| gene | 1389874 | 1392930 |
| mRNA | 1389874 | 1392930 |
| exon | 1389874 | 1390468 |
| exon | 1390652 | 1391042 |
| exon | 1391614 | 1392930 |
| CDS | 1390293 | 1390468 |
| CDS | 1390652 | 1391042 |
| CDS | 1391614 | 1391847 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001439 | CAMTA Transcription_Regulator(from PlantTFDB) sphingolipid metabolic process, glucosylceramidase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03647.12 | Tmemb_14 | 203 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.