PH01000010G0700's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor, putative, expressed
Blast result AT5G35620 : 1.30E-55
Blast annotation: Eukaryotic initiation factor 4E protein
2.Location
Scaffold: PH01000010
Strand: -
| Region | Start | End |
| gene | 485228 | 488991 |
| mRNA | 485228 | 488991 |
| exon | 485228 | 486169 |
| exon | 486344 | 486409 |
| exon | 487077 | 487199 |
| exon | 487418 | 487586 |
| exon | 488498 | 488991 |
| CDS | 486119 | 486169 |
| CDS | 486344 | 486409 |
| CDS | 487077 | 487199 |
| CDS | 487418 | 487586 |
| CDS | 488498 | 488652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01652.17 | IF4E | 13 | 166 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0005737 | cytoplasm |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.