PH01000010G1020's details annotation
1.Annotation
ICBR annotation: SNF7 domain containing protein, putative, expressed
Blast result AT1G17730 : 3.10E-92
Blast annotation: vacuolar protein sorting 46.1
2.Location
Scaffold: PH01000010
Strand: -
| Region | Start | End |
| gene | 707134 | 708369 |
| mRNA | 707134 | 708369 |
| exon | 707134 | 708369 |
| CDS | 707658 | 708272 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03357.20 | Snf7 | 12 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | charged multivesicular body protein 1 | ko04144 | K12197 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.