PH01000011G0660's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT1G19220 : 2.00E-156
Blast annotation: auxin response factor 19
2.Location
Scaffold: PH01000011
Strand: -
| Region | Start | End |
| gene | 432484 | 439818 |
| mRNA | 432484 | 439818 |
| exon | 432484 | 433435 |
| exon | 435636 | 435800 |
| exon | 436042 | 436267 |
| exon | 436319 | 436462 |
| exon | 436537 | 436627 |
| exon | 436899 | 436983 |
| exon | 437084 | 437239 |
| exon | 437316 | 437372 |
| exon | 437457 | 437552 |
| exon | 437685 | 437752 |
| exon | 438354 | 438397 |
| exon | 438474 | 439818 |
| CDS | 433271 | 433435 |
| CDS | 435636 | 435800 |
| CDS | 436042 | 436267 |
| CDS | 436319 | 436462 |
| CDS | 436537 | 436627 |
| CDS | 436899 | 436983 |
| CDS | 437084 | 437239 |
| CDS | 437316 | 437372 |
| CDS | 437457 | 437552 |
| CDS | 437685 | 437752 |
| CDS | 438354 | 438397 |
| CDS | 438474 | 438841 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 234 | 334 |
| PF06507.12 | Auxin_resp | 353 | 445 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.