PH01000011G2580's details annotation
1.Annotation
ICBR annotation: peptidase family C78 domain containing protein, expressed
Blast result AT5G24680 : 2.00E-83
Blast annotation: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2
2.Location
Scaffold: PH01000011
Strand: +
| Region | Start | End |
| gene | 1696519 | 1700587 |
| mRNA | 1696519 | 1700587 |
| exon | 1696519 | 1698131 |
| exon | 1698396 | 1698561 |
| exon | 1698922 | 1699581 |
| exon | 1699700 | 1699814 |
| exon | 1700217 | 1700312 |
| exon | 1700399 | 1700587 |
| CDS | 1698119 | 1698131 |
| CDS | 1698396 | 1698561 |
| CDS | 1698922 | 1699581 |
| CDS | 1699700 | 1699814 |
| CDS | 1700217 | 1700312 |
| CDS | 1700399 | 1700482 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001414 | PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001435 | Jumonji Transcription_Regulator(from iTAK) PHD Transcription_Regulator(from iTAK) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07910.12 | Peptidase_C78 | 85 | 352 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.