PH01000011G2990's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000011
Strand: +
| Region | Start | End |
| gene | 1979881 | 1983937 |
| mRNA | 1979881 | 1983937 |
| exon | 1979881 | 1980913 |
| exon | 1981179 | 1981357 |
| exon | 1982914 | 1983038 |
| exon | 1983113 | 1983736 |
| exon | 1983826 | 1983937 |
| CDS | 1980596 | 1980913 |
| CDS | 1981179 | 1981357 |
| CDS | 1982914 | 1983038 |
| CDS | 1983113 | 1983736 |
| CDS | 1983826 | 1983830 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001130 | protein N-linked glycosylation via asparagine, endoplasmic reticulum membrane, WNK_NRBP (from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Valine,_leucine_and_isoleucine_degradation Benzoate_degradation Synthesis_and_degradation_of_ketone_bodies Propanoate_metabolism Butanoate_metabolism Tryptophan_metabolism Carbon_fixation_pathways_in_prokaryotes Various_types_of_N-glycan_biosynthesis Lysine_degradation Fatty_acid_metabolism Glyoxylate_and_dicarboxylate_metabolism N-Glycan_biosynthesis Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.