Annotation of co-expression genes

PH01000012G0240's details annotation

1.Annotation

ICBR annotation: Rf1, mitochondrial precursor, putative, expressed

Blast result AT1G62670 : 9.90E-82
Blast annotation: rna processing factor 2

2.Location

Scaffold: PH01000012
Strand: -

RegionStartEnd
gene175928178859
mRNA175928178859
exon175928177192
exon177666178060
exon178331178859
CDS176008177192
CDS177666178060
CDS178331178787

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13041.5PPR_24997
PF12854.6PPR_1117148
PF13041.5PPR_2172220
PF13041.5PPR_2242288
PF13041.5PPR_2299348
PF13041.5PPR_2369415
PF13041.5PPR_2440485
PF13041.5PPR_2509557
PF01535.19PPR581611

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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