PH01000012G0700's details annotation
1.Annotation
ICBR annotation: transferase family protein, putative, expressed
Blast result AT5G17540 : 1.40E-45
Blast annotation: HXXXD-type acyl-transferase family protein
2.Location
Scaffold: PH01000012
Strand: +
| Region | Start | End |
| gene | 468720 | 471203 |
| mRNA | 468720 | 471203 |
| exon | 468720 | 469297 |
| exon | 470307 | 471203 |
| CDS | 468851 | 469297 |
| CDS | 470307 | 470711 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000037 | AP2/ERF-ERF Transcription_Regulator(from iTAK) ERF Transcription_Regulator(from PlantTFDB) Tify Transcription_Regulator(from iTAK) apoplast, Cysteine_and_methionine_metabolism Plant_hormone_signal_transduction regulation of transcription, DNA-dependent, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02458.14 | Transferase | 13 | 151 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.