PH01000012G1060's details annotation
1.Annotation
ICBR annotation: tetratricopeptide repeat, putative, expressed
Blast result AT1G33400 : 3.20E-48
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000012
Strand: -
| Region | Start | End |
| gene | 684707 | 691224 |
| mRNA | 684707 | 691224 |
| exon | 684707 | 685578 |
| exon | 686129 | 686243 |
| exon | 686347 | 686513 |
| exon | 686601 | 686680 |
| exon | 687142 | 687172 |
| exon | 687606 | 687743 |
| exon | 688920 | 689134 |
| exon | 689223 | 689430 |
| exon | 689573 | 689644 |
| exon | 689948 | 690034 |
| exon | 690610 | 690744 |
| exon | 690851 | 691224 |
| CDS | 685354 | 685578 |
| CDS | 686129 | 686243 |
| CDS | 686347 | 686513 |
| CDS | 686601 | 686680 |
| CDS | 687142 | 687172 |
| CDS | 687606 | 687743 |
| CDS | 688920 | 689134 |
| CDS | 689223 | 689430 |
| CDS | 689573 | 689644 |
| CDS | 689948 | 690034 |
| CDS | 690610 | 690744 |
| CDS | 690851 | 690979 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.