PH01000012G1620's details annotation
1.Annotation
ICBR annotation: mutS domain V family protein, expressed
Blast result AT5G54090 : 2.00E-179
Blast annotation: DNA mismatch repair protein MutS, type 2
2.Location
Scaffold: PH01000012
Strand: +
| Region | Start | End |
| gene | 1086037 | 1097672 |
| mRNA | 1086037 | 1097672 |
| exon | 1086037 | 1087460 |
| exon | 1087568 | 1087699 |
| exon | 1088208 | 1088375 |
| exon | 1088482 | 1088607 |
| exon | 1089158 | 1089208 |
| exon | 1089633 | 1089701 |
| exon | 1089766 | 1089848 |
| exon | 1090303 | 1090426 |
| exon | 1090501 | 1090560 |
| exon | 1091131 | 1091373 |
| exon | 1091562 | 1091645 |
| exon | 1091716 | 1091863 |
| exon | 1092134 | 1092261 |
| exon | 1092429 | 1092476 |
| exon | 1092945 | 1093106 |
| exon | 1093369 | 1093375 |
| exon | 1095326 | 1095429 |
| exon | 1095763 | 1095833 |
| exon | 1096228 | 1096526 |
| exon | 1096713 | 1097672 |
| CDS | 1087248 | 1087460 |
| CDS | 1087568 | 1087699 |
| CDS | 1088208 | 1088375 |
| CDS | 1088482 | 1088607 |
| CDS | 1089158 | 1089208 |
| CDS | 1089633 | 1089701 |
| CDS | 1089766 | 1089848 |
| CDS | 1090303 | 1090426 |
| CDS | 1090501 | 1090560 |
| CDS | 1091131 | 1091373 |
| CDS | 1091562 | 1091645 |
| CDS | 1091716 | 1091863 |
| CDS | 1092134 | 1092261 |
| CDS | 1092429 | 1092476 |
| CDS | 1092945 | 1093106 |
| CDS | 1093369 | 1093375 |
| CDS | 1095326 | 1095429 |
| CDS | 1095763 | 1095833 |
| CDS | 1096228 | 1096526 |
| CDS | 1096713 | 1096891 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00488.20 | MutS_V | 474 | 607 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003684 | damaged DNA binding |
| GO:0005524 | ATP binding |
| GO:0006298 | mismatch repair |
| GO:0030983 | mismatched DNA binding |
| GO:0045005 | maintenance of fidelity involved in DNA-dependent DNA replication |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.