PH01000012G2150's details annotation
1.Annotation
ICBR annotation: OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
Blast result AT4G36195 : 0.00E+00
Blast annotation: Serine carboxypeptidase S28 family protein
2.Location
Scaffold: PH01000012
Strand: +
| Region | Start | End |
| gene | 1393003 | 1399391 |
| mRNA | 1393003 | 1399391 |
| exon | 1393003 | 1394395 |
| exon | 1394978 | 1395103 |
| exon | 1395266 | 1395421 |
| exon | 1395503 | 1395685 |
| exon | 1395783 | 1395899 |
| exon | 1396181 | 1396252 |
| exon | 1396522 | 1396575 |
| exon | 1396656 | 1396727 |
| exon | 1396894 | 1396999 |
| exon | 1397141 | 1397237 |
| exon | 1397509 | 1397603 |
| exon | 1398226 | 1398300 |
| exon | 1398450 | 1398533 |
| exon | 1398735 | 1398833 |
| exon | 1399036 | 1399391 |
| CDS | 1394204 | 1394395 |
| CDS | 1394978 | 1395103 |
| CDS | 1395266 | 1395421 |
| CDS | 1395503 | 1395685 |
| CDS | 1395783 | 1395899 |
| CDS | 1396181 | 1396252 |
| CDS | 1396522 | 1396575 |
| CDS | 1396656 | 1396727 |
| CDS | 1396894 | 1396999 |
| CDS | 1397141 | 1397237 |
| CDS | 1397509 | 1397603 |
| CDS | 1398226 | 1398300 |
| CDS | 1398450 | 1398533 |
| CDS | 1398735 | 1398833 |
| CDS | 1399036 | 1399088 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05577.11 | Peptidase_S28 | 56 | 443 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008236 | serine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.